Projection
Task for 3D->2D maximum-intensity projection.
| FUNCTION | DESCRIPTION |
|---|---|
projection |
Perform intensity projection along Z axis with a chosen method. |
Classes¶
Functions:¶
projection(*, zarr_url, method=DaskProjectionMethod.MIP, output_image_name=Field(default='{image_name}_{method}', pattern='^.*\\{image_name\\}.*$'), overwrite=False)
¶
Perform intensity projection along Z axis with a chosen method.
this task will write the output in a new OME-Zarr file
in the same location as the input one, with the same name plus a suffix indicating the projection method used (e.g. "_MIP" for maximum intensity projection).
| PARAMETER | DESCRIPTION |
|---|---|
|
Path or url to the individual OME-Zarr image to be processed.
TYPE:
|
|
Choose which method to use for intensity projection along the Z axis.
TYPE:
|
|
The template for the output image name. To make sure that the output image is unique it must contain the placeholder {image_name}, and it can optionally contain the placeholder {method}.
TYPE:
|
|
If True, previous projected images with the same "output_image_name" will be overwritten.
TYPE:
|