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Workflow page

The workflow page is where you build a workflow by adding and ordering tasks, set their arguments, and run it on a dataset.

What is a workflow?

A workflow is an ordered sequence of tasks that processes the images in a dataset — for example converting to OME-Zarr, segmenting objects, then measuring features. You build a workflow by adding and arranging tasks, then run it on a dataset to produce results.

Learn more about workflows →

TODO: Figure out how to split this page up into relevant sub-pages that get linked to:

  • Task list
  • Task arguments
  • Workflow submission
  • Workflow monitoring
  • Log access

Overview

TODO Screenshot

Adding and ordering tasks

TODO — adding a task; reordering; removing. This is the list of task of the current workflow. You can add new tasks with the "+" button, or reorder the existing ones with the "arrows" button.

If a task is marked as non-active, you can try to reactivate it at Tasks management, but only if it is a task that you collected yourself.

Task arguments

TODO — editing arguments; validation. meta args

Documentation

Task info Workflow & task descriptions by the user

Run a workflow

TODO — selecting a dataset;

Monitor running workflows

Status indicators

Log access

Individual logs Runs Warnings

Common actions

  • Add a task — TODO.
  • Run on a dataset — TODO.